4-1i. Model of E. coli F 1Fo ATP synthase ................. ...............144........... 4-2. Oligonucleotides for cysteine mutagenesis of the unc operon .............. .... ........._...150 4-3. Expression plasmid of cysteine mutants ................. ...............155........... .. 4-4. Western blot analysis of cysteine mutant b subunits of differing length................. 158 4-5. Model of F1Fo ATP synthase with cysteine substitutions in the b and 6 subunits ..159 5-1 Amino acid sequence and domains of the E. coli b subunit ................. ........_._.....162 5-2. Oligonucleotides for mutagenesis at the amino and carboxyl termini in the unc operon ................ ...............167............. 5-3. ATP-driven energization of membrane vesicles prepared from b subunit membrane domain mutants .............. ...............172.... 5-4. Amino acid insertion and deletion analysis of the E. coli b subunit ................... ..... 174 5-5. Mutations constructed throughout the b subunit ........._._. ......___ ................177 6-1. Design of FRET experiments to measure the peripheral stalk ..........._..._ ...............193 6-2. Model of rotation inhibition due to a fusion protein on the a subunit ................... .. 195 6-3. Sequence alignments of subunits b and b from various species with the b subunit of E coli .............. ...............200.... B-1. Diagram of purification procedures for homogeneous heterodimeric bvs/bhis F1Fo ATP synthase complexes .............. ...............208....