IDENTIFICATION AND GEOGRAPHICAL DISTRIBUTION OF ALLELES AT LOCUS 178 Introduction Nuclear DNA restriction fragment length polymorphisms (RFLPs) are biparentally inherited, codominantly expressed markers shown to be a valuable source of genetic variability in honey bees (Hall 1986, 1990, 1992b). Relative to the biochemical variability that can be discerned in allozyme frequencies, RFLPs are more abundant and do not require gene expression for their detection. East European- and African-specific RFLP markers have been identified, as well as markers common to African and a west European species (Hall 1986, 1990, 1992b). In neotropical colonies, the east European markers have been found at very low frequencies in areas where African bees have become established, indicating that there has been limited paternal introgression from European colonies into the African bee population (Hall 1990). One limitation to date in the use of RFLPs to study ancestry in neotropical bees has been the lack of additional markers specific for other subspecies, particularly A. m. mellifera. Described in this chapter are nuclear DNA RFLPs, detected with a single genomic probe, that distinguish bees of European and African ancestry. While